【摘 要】
:
The selection and study of descriptive variables of protein-protein complex interface is a major question that many biologists come across when the research of
【机 构】
:
Bioinformatics Laboratory
论文部分内容阅读
The selection and study of descriptive variables of protein-protein complex interface is a major question that many biologists come across when the research of protein-protein recognition is concerned. Several variables have been proposed to understand the structural or energetic features of complex interfaces. Here a systematic study of some of these "traditional" variables, as well as a few new ones, is introduced. With the values of these variables extracted from 42 PDB samples with real or false complex interfaces, a binary logistic regression analysis is performed, which results in an effective empirical model for the evaluation of binding probabilities of protein-protein interfaces. The model is validated with 12 samples, and satisfactory results are obtained for both the training and validation sets. Meanwhile, three potential dimeric interfaces of staphylokinase have been investigated and one with the best suitability to our model is proposed.
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